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Smac/Diablo Peptide [AVPIAQKSE], 5 - FAM labeled、H2N-AVPIAQKSEK-K(5Fam)-NH2、H2N-Ala-Val-Pro-Ile-Ala-Gln-Lys-Ser-Glu-Lys-Lys(5Fam)-NH2,杭州专肽生物的产品

Smac/Diablo Peptide [AVPIAQKSE], 5 - FAM labeled

编号:434344

CAS号:

单字母:H2N-AVPIAQKSEK-K(5FAM)-NH2

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  • 编号:434344
    中文名称:Smac/Diablo Peptide [AVPIAQKSE], 5 - FAM labeled
    英文名:Smac/Diablo Peptide [AVPIAQKSE], 5 - FAM labeled
    单字母:H2N-AVPIAQKSEK-K(5FAM)-NH2
    三字母:H2N

    N端氨基

    -Ala

    丙氨酸

    -Val

    缬氨酸

    -Pro

    脯氨酸

    -Ile

    异亮氨酸

    -Ala

    丙氨酸

    -Gln

    谷氨酰胺

    -Lys

    赖氨酸

    -Ser

    丝氨酸

    -Glu

    谷氨酸

    -Lys

    赖氨酸

    -Lys(5FAM)

    赖氨酸侧链标记5-FAM

    -NH2

    C端酰胺化

    氨基酸个数:11
    分子式:C74H106N16O21
    平均分子量:1555.73
    精确分子量:1554.77
    等电点(PI):10.81
    pH=7.0时的净电荷数:1.98
    平均亲水性:0.57777777777778
    疏水性值:-0.49
    消光系数:-
    标签:FAM、FITC修饰肽    细胞凋亡肽(Apoptosis Peptides)   

  • 多肽荧光标记由于没有放射性,实验操作简单。因此,目前在生物学研究中多肽荧光标记应用非常广泛,多肽荧光标记方法与荧光试剂的结构有关系,对于有游离羧基的采用的方法与接多肽反应相同,也采用HBTU/HOBt/DIEA方法连接。 在N端标记FITC的多肽需经历环化作用来形成荧光素,通常会伴有最后一个氨基酸的去除,但当有一个间隔器如氨基己酸,或者是通过非酸性环境将目的多肽从树脂上切下来时,这种情况可避免在切割的过程中被TFA切割掉。
            人们利用利用荧光标记的多肽来检测目标蛋白的活性,并将 其发展的高通量活性筛选方法应用于疾病治疗靶点蛋白的药物筛选和药物开发(例如,各种激 酶、磷酸酶、肽酶等)。
            专肽生物能够提供技术成熟的各种荧光标记多肽。
     

     

    下面是一些常见的多肽修饰荧光物质结构:




    FITC标记
     

     

          FITC(异硫氰酸荧光素)具有比较高的活性,我们公司可以通过两种方式将FITC标记于多肽 上:(1) 将FITC标记于赖氨酸(Lys)或被选择性地脱保护的鸟氨酸(ornithine)侧链氨基 上;(2) 将FITC标记于多肽N端氨基。

     

          当在N端标记时,建议在最后一个氨基和由异硫氰酸酯与氨基反应产生的硫脲键之间引入 烷基间隔器(alkyl spacer),如氨基己酸(Ahx)。链接切割需要酸性环境,在N端标记FITC 的多肽需经历环化作用来形成荧光素,通常会伴有最后一个氨基酸的去除,但当有一个间隔器 如氨基己酸,或者是通过非酸性环境将目的肽从树脂上切下来时,这种情况可避免。空间位阻 被认为是在荧光染料前使用Ahx的主要原因,而不是为什么FITC不能直接偶联在多肽上的原因。

     

          Ahx或b-Ala均可作为间隔器用于FITC标记的多肽上。

     

     

     



     

    普通荧光修饰

     

    荧光修饰中文名称 N端 N端带有linker
    生物素标记多肽 Biotin- Biotin-Ahx-
    异硫氰酸荧光素 FITC-   FITC-Ahx-  
    5-羧基荧光素 5-FAM- 5-FAM-Ahx- 
    丹磺酰荧光素 Dansyl- Dansyl-Ahx- 
    5-羧基四甲基罗丹明 TMR-  (TAMRA-) TMR-Ahx-  (TAMRA-Ahx-) 

    通过Lys侧链氨基连接的荧光修饰

     

    多肽N端 多肽序列中间 N端带有linker
    生物素标记多肽 Biotin- 多肽C端
    Lys(Biotin)-  -Lys(Biotin)-- -Lys(Biotin) 
    Lys(FITC)- -Lys(FITC)-  -Lys(FITC)
    Lys(5-FAM)- -Lys(5-FAM)- -Lys(5-FAM)
    Lys(Dansyl)-  -Lys(Dansyl)- -Lys(Dansyl)
    Lys(TMR)- -Lys(TMR)-  -Lys(TMR)
    Lys(Dnp)- -Lys(Dnp)-  -Lys(Dnp)



    专肽常做的荧光物质的激发光波长和发射光波长。可供参考选择:
     

    荧光基团 Ex(nm) Em(nm) 荧光基团 Ex(nm) Em(nm)
    羟基香豆素 325 386 R-phycoerythrin (PE) (489) 565 578
    丹磺酰氯 340 578 Rhodamine Red-X 560 580
    AMC 345 445 Tamara 565 580
    甲氧基香豆素 360 410 Alexa fluor 555 556 573
    Alexa fluor 系列 345 442 Alexa fluor 546 556 573
    氨基香豆素 350 445 Rox 575 602
    Dabcyl 453 - Alexa fluor 568 578 603
    Cy2 490 510 Texas Red 589 615
    FAM 495 517 Alexa fluor 594 590 617
    Alexa fluor 488 494 517 Alexa fluor 621 639
    FITC 495 519 Alexa fluor 633 650 668
    Alexa fluor 430 430 545 Cy5 (625) 650 670
    5-FAM 492 518 Alexa fluor 660 663 690
    Alexa fluor 532 530 530 Cy5.5 675 694
    HEX 535 556 TruRed 490; 675 695
    5-TAMRA 542 568 Alexa fluor 680 679 702
    Cy3 550 570 Cy7 743 767
    TRITC 547 572 Cy3.5 581 596

    Definition
    Apoptosis or programmed cell death is a normal component of the development and health of multicellular organisms. Cells die in response to a variety of stimuli and during apoptosis they do so in a controlled, regulated fashion.

    Discovery
    In 1885,  Flemming W described the process of programmed cell death. John Kerr's discovery, in late 1960s, initially called "shrinkage necrosis" but which he later renamed "apoptosis", came about when his attention was caught by a curious form of liver cell death during his studies of acute liver injury in rats 1,2.  Kerr in 1972 proposed the term apoptosis is for mechanism of controlled cell deletion, which appears to play a complementary but opposite role to mitosis in the regulation of animal cell populations. Its morphological features suggest that it is an active, inherently programmed phenomenon, and it has been shown that it can be initiated or inhibited by a variety of environmental stimuli, both physiological and pathological 3. 

    Structural Characteristics
    Heterodimerization between members of the Bcl-2 family of proteins is a key event in the regulation of programmed cell death. The molecular basis for heterodimer formation was investigated by determination of the solution structure of a complex between the survival protein Bcl-xL and the death-promoting region of the Bcl-2-related protein Bak. The structure and binding affinities of mutant Bak peptides indicate that the Bak peptide adopts an amphipathic  helix that interacts with Bcl-xL through hydrophobic and electrostatic interactions. Mutations in full-length Bak that disrupt either type of interaction inhibit the ability of Bak to heterodimerize with Bcl-xL 4.

    The structure of the 16–amino acid peptide complexed with a biologically active deletion mutant of Bcl-xL was determined by nuclear magnetic resonance spectroscopy (NMR). The structure was determined from a total of 2813 NMR-derived restraints and is well defined by the NMR data. The Bak peptide forms a helix when complexed to Bcl-xL. The COOH terminal portion of the Bak peptide interacts predominantly with residues in the BH2 and BH3 regions. Melanoma inhibitor of apoptosis (ML-IAP) is a potent anti-apoptotic protein that is upregulated in a number of melanoma cell lines but not expressed in most normal adult tissues. Overexpression of IAP proteins, such as ML-IAP or the ubiquitously expressed X-chromosome-linked IAP (XIAP), in human cancers has been shown to suppress apoptosis induced by a variety of stimuli. X-ray crystal structures of ML-IAP-BIR in complex with Smac- and phage-derived peptides, together with peptide structure−activity-relationship data, indicate that the peptides can be modified to provide increased binding affinity and selectivity for ML-IAP-BIR relative to XIAP-BIR3 5.

    Mode of Action
    Upon receiving specific signals instructing the cells to undergo apoptosis a number of distinctive changes occur in the cell. Families of proteins known as caspases are typically activated in the early stages of apoptosis. These proteins breakdown or cleave key cellular components that are required for normal cellular function including structural proteins in the cytoskeleton and nuclear proteins such as DNA repair enzymes. The caspases can also activate other degradative enzymes such as DNases, which begin to cleave the DNA in the nucleus.

    Apoptotic cells display distinctive morphology during the apoptotic process. Typically, the cell begins to shrink following the cleavage of lamins and actin filaments in the cytoskeleton. The breakdown of chromatin in the nucleus often leads to nuclear condensation and in many cases the nuclei of apoptotic cells take on a "horse-shoe" like appearance. Cells continue to shrink, packaging themselves into a form that allows for their removal by macrophages. There are a number of mechanisms through which apoptosis can be induced in cells. The sensitivity of cells to any of these stimuli can vary depending on a number of factors such as the expression of pro- and anti-apoptotic proteins (eg. the Bcl-2 proteins or the Inhibitor of Apoptosis Proteins), the severity of the stimulus and the stage of the cell cycle. The Bcl-2 family of proteins plays a central role in the regulation of apoptotic cell death induced by a wide variety of stimuli. Some proteins within this family, including Bcl-2 and Bcl-xL, inhibit programmed cell death, and others, such as Bax and Bak, can promote apoptosis 6, 7.

    Functions

    For development, Apoptosis is as needed for proper development as mitosis is.  Examples: The resorption of the tadpole tail at the time of its metamorphosis into a frog occurs by apoptosis.

    Integrity of the organism, Apoptosis is needed to destroy cells that represent a threat to the integrity of the organism. Examples: Cells infected with viruses8.

    Cells of the immune system, as cell-mediated immune responses wane, the effector cells must be removed to prevent them from attacking body constituents. CTLs induce apoptosis in each other and even in themselves 9.

    Cells with DNA damage, damage to its genome can cause a cell to disrupt proper embryonic development leading to birth defects to become cancerous.

    References

    1.     Kerr JF (1965). A histochemical study of hypertrophy and ischaemic injury of rat liver with special reference to changes in lysosomes. Journal of Pathology and Bacteriology, 90(90):419-435.

    2.     Kerr JF, Wyllie AH, Currie AR (1972). Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br. J. Cancer., 26(4):239-257.

    3.     O'Rourke MG, Ellem KA (2000). John Kerr and apoptosis. Med. J. Aust., 173(11-12): 616-617.

    4.     Franklin MC, Kadkhodayan S, Ackerly H, Alexandru D, Distefano MD, Elliott LO, Flygare JA, Mausisa G, Okawa DC, Ong D, Vucic D, Deshayes K, Fairbrother WJ (2003). Structure and function analysis of peptide antagonists of melanoma inhibitor of apoptosis (ML-IAP). Biochemistry, 42(27):8223-8231.

    5.     Sattler M, Liang H, Nettesheim D, Meadows RP, Harlan JE, Eberstadt M, Yoon HS, Shuker SB, Chang BS, Minn AJ, Thompson CB, Fesik SW (1997). Structure of bcl-xl-bak peptide complex: recognition between regulators of apoptosis. Science, 275(5302):983-986.

    6.     Hanada M, Aimé-Sempé C, Sato T, Reed JC (1995). Structure-function analysis of Bcl-2 protein. Identification of conserved domains important for homodimerization with Bcl-2 and heterodimerization with Bax. J. Biol. Chem., 270(20):11962-11969.

    7.     Cheng EHY, Levine B, Boise LH, Thompson CB, Hardwic JM (1996). Bax-independent inhibition of apoptosis by Bcl-xL.Nature, 379:554-556.

    8.     Alimonti JB, Ball TB, Fowke KR (2003). Mechanisms of CD4+ T lymphocyte cell death in human immunodeficiency virus infection and AIDS. J Gen Virology., 84(84): 1649-1661.

    9.     Werlen G, Hausmann B, Naeher D, Palmer E (2003). Signaling life and death in the thymus: timing is everything. Science. 299(5614):1859-1863.

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